BtaEX6086680 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019242 | CHRNB1
Description
Bos taurus cholinergic receptor, nicotinic, beta 1 (muscle) (CHRNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174516]
Coordinates
chr19:27757363-27758710:+
Coord C1 exon
chr19:27757363-27757502
Coord A exon
chr19:27758078-27758122
Coord C2 exon
chr19:27758601-27758710
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAAAACTTTTCCCTTCTAGAAC
3' ss Score
9.93
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCGCCCGCGGCTCGGAGGCGGAGGGCCGACTCCGCGAGAAACTTTTCTCAGGCTATGATAGCACGGTGCGGCCGGCGCGGGAGGTGGGAGACCGTGTCTGGGTCAGCATTGGTCTCACCCTGGCGCAACTCATCAGCCTG
Seq A exon
AACGAGAAGGATGAGGAGATGAGCACAAAAGTCTACTTAGACCTG
Seq C2 exon
GAATGGACTGACTACAGGCTCAGCTGGGACCCTGAGGAGCACGAGGGCATCGATTCACTCCGCATCTCAGCGGAATCCGTGTGGCTACCCGACGTGGTGCTCCTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019242-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(17.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.4=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTCCGCGAGAAACTTTT
R:
AGCTGAGCCTGTAGTCAGTCC
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]