RnoEX0021220 @ rn6
Exon Skipping
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56401224-56402973:-
Coord C1 exon
chr10:56402834-56402973
Coord A exon
chr10:56402250-56402294
Coord C2 exon
chr10:56401224-56401333
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTTAAATTTTCCATTCTAGAAC
3' ss Score
10.12
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GAGCCCGCGGGTCGGAAGCCGAAGGCCAACTGCTTAAGAAACTTTTCTCGGATTATGATAGCTCAGTAAGGCCGGCGCAGGAGGTGGGAGACCGCGTCGGGGTCAGCATCGGCCTCACCCTGGCGCAACTCATCAGCCTG
Seq A exon
AACGAGAAGGATGAAGAAATGAGCACAAAGGTGTACTTAGACCTG
Seq C2 exon
GAGTGGACCGACTACAGGTTAAGCTGGGACCCCGCAGAACACGATGGCATCGAGTCTCTCCGTGTCACTGCTGAATCTGTTTGGCTCCCGGACGTGGTGCTGCTGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698-'1-3,'1-1,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(17.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.4=100)
C2:
PF0293118=Neur_chan_LBD=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGGCCAACTGCTTAAGA
R:
AGCTTAACCTGTAGTCGGTCCA
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]