BtaEX6087024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28731656-28733862:-
Coord C1 exon
chr19:28733764-28733862
Coord A exon
chr19:28732003-28732146
Coord C2 exon
chr19:28731656-28731751
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTATTCTGTTTTCTTTCAGCTG
3' ss Score
11.04
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCTCGTGCTGTTCGTCAAGCAAAAGATGAGCGTACTTTTCATATCTTTTACCAATTGTTATCTGGAGCAGGAGAACATCTGAAGT
Seq A exon
CTGATTTGCTCCTTGAAGGATTTAATAACTACAGATTTCTCTCCAATGGCTATATTCCTATTCCGGGACAACAAGACAAAGATAACTTCCAGGAGACAATGGAGGCAATGCATATAATGGGCTTCTCCCATGAAGAGATTCTGT
Seq C2 exon
CAATGCTTAAAGTGGTATCTTCAGTGCTTCAGTTTGGAAATATTTCTTTCAAAAAGGAGCGAAACACTGATCAAGCCTCCATGCCGGAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGGAAAAATCTCGTGCT
R:
CCGGCATGGAGGCTTGATC
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]