MmuEX6086423 @ mm9
Exon Skipping
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68574155-68576435:+
Coord C1 exon
chr11:68574155-68574253
Coord A exon
chr11:68576013-68576156
Coord C2 exon
chr11:68576340-68576435
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTCGTTGTCTTTCCTTTTAGCCG
3' ss Score
8.9
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCTAAAGATGAGCGTACATTTCATATCTTTTATCAGTTGCTCTCTGGAGCAGGGGAACACCTGAAAT
Seq A exon
CCGACTTACTCCTGGAAGGTTTCAACAACTACAGATTCCTCTCCAATGGCTATATTCCTATTCCTGGACAGCAAGACAAGGATAACTTCCAGGAGACCATGGAAGCCATGCACATCATGGGCTTCTCTCACGAAGAGATCCTCT
Seq C2 exon
CAATGCTTAAAGTCGTATCTTCAGTGCTGCAGTTTGGAAACATCTCTTTCAAAAAGGAGAGAAACACTGACCAAGCCTCCATGCCGGAGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(6.7=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGGAAAAGTCTCGTGC
R:
CTGTGTTCTCCGGCATGG
Band lengths:
195-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: