GgaEX6015806 @ galGal4
Exon Skipping
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1735173-1736742:-
Coord C1 exon
chr18:1736644-1736742
Coord A exon
chr18:1735572-1735715
Coord C2 exon
chr18:1735173-1735268
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCCCCCCACTACAGCTG
3' ss Score
9.21
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACTTGTTGGAGAAGTCTCGTGCTGTTCGCCAAGCTAAAGATGAGAGGACATTTCATATCTTCTACCAGCTGCTGGCTGGAGCAGGAGAGCACCTCAAGT
Seq A exon
CTGACTTGCTGCTTGAAGGATTTAACAATTACAGATTTTTATCCAATGGCTACATCCCCATTCCTGGGCAGCAAGACAAGGATAACTTTCAGGAGACGATGGAAGCAATGCATATCATGGGCTTTTCGCACGATGAGATCTTGT
Seq C2 exon
CAATGCTGAAAGTGGTGTCTTCAGTGCTACAGTTTGGAAATATTTCCTTCAAGAAGGAGAGAAATACTGATCAAGCTTCTATGCCAGAAAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'22-22,'22-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTTGGAGAAGTCTCGTGC
R:
CAGTATTTTCTGGCATAGAAGCTTGA
Band lengths:
195-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]