DreEX6020228 @ danRer10
Exon Skipping
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7445769-7447680:+
Coord C1 exon
chr6:7445769-7445867
Coord A exon
chr6:7446541-7446684
Coord C2 exon
chr6:7447585-7447680
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTGTTCTTTTGGCAGCTG
3' ss Score
8.98
5' ss Seq
TATGTAAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATCTTCTTGAAAAGTCCAGGGCCATTCGCCAAGCCAAAGATGAACGCACCTTCCACGTCTTCTACCAGCTGTTGGCCGGTGCTGGAGAACATCTGAGAT
Seq A exon
CTGATCTACTCCTGGAGGGTTTCAATAGCTACCGCTTCCTCTCCAATGGTAACATTCCCATCCCTGGCCAACAGGACAAGGATAATTTCCAAGAGACCATGGAAGCCATGCATATTATGAGCTTCAATCATGAGGAAATCTTAT
Seq C2 exon
CAATGCTGAAGGTGGTTTCAGCCGTCCTGCAGTTTGGTAACATTGTGTTCAAGAAGGAGAGAAACACAGATCAGGCCTCTATGCCTGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.152
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTGAAAAGTCCAGGGCC
R:
CTGTGTTTTCAGGCATAGAGGC
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]