RnoEX6047851 @ rn6
Exon Skipping
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55350368-55352801:+
Coord C1 exon
chr10:55350368-55350466
Coord A exon
chr10:55352383-55352526
Coord C2 exon
chr10:55352706-55352801
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTCTTTCCTTTCAGCCG
3' ss Score
11.52
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAGTCCCGTGCTGTTCGTCAAGCTAAAGATGAACGCACGTTTCATATCTTTTATCAGTTGCTCTCTGGAGCAGGGGAACACCTGAAGT
Seq A exon
CCGACTTACTCCTGGAAGGCTTTAATAACTACAGATTCCTCTCCAACGGCTACATCCCTATTCCTGGACAGCAAGACAAGGATAACTTTCAGGAGACCATGGAAGCCATGCACATAATGGGCTTCTCTCACGAAGAGATCCTCT
Seq C2 exon
CAATGCTTAAAGTCGTGTCTTCAGTGCTGCAGTTTGGAAACATCTCTTTCAAAAAGGAGAGGAACACTGACCAAGCTTCCATGCCCGAGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886-'18-12,'18-11,19-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTGGAAAAGTCCCGTGC
R:
CTGTGTTCTCGGGCATGGAAG
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]