BtaEX6087357 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33608129-33612243:-
Coord C1 exon
chr19:33612122-33612243
Coord A exon
chr19:33609274-33609422
Coord C2 exon
chr19:33608129-33608271
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCTTCCCTTTCAGAGT
3' ss Score
13.05
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GTACTGGGATCTGAAAAGTGGGGCTTGTATACGCATCTTCAATGGCCACCAGGGGACCATCACCTGCATGGATGTGTATAAGAACAAGCTTGCCTCTGGAGCAAAAGATTGCCAGGTAAAAG
Seq A exon
AGTGGGATATAGAGACAGGGAAGTGCTTAAAGACTTTCAAACACAAAGACCCCATCCTGGATACCAGGATCAATGACACGTACATCGTGAGCAGCTGTGAGAAAGGCATGGTCAAAGTGTGGCACATGGTCACAGCCCAGCTGGTAAAG
Seq C2 exon
ACGCTCAACGGCCACGAGGGGGCCGTGAAGTGTCTATACTTCGACCAGTGGCATCTCCTGTCAGGAAGCACTGATGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAGCGGTGCCTCATGGCCTTCAAACATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605-'20-20,'20-18,22-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
A:
PF0040027=WD40=PD(5.4=4.0),PF0040027=WD40=WD(100=72.0),PF0040027=WD40=PU(10.8=8.0)
C2:
PF0040027=WD40=PD(83.8=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATCTGAAAAGTGGGGC
R:
GAGGCACCGCTCGTACTTTC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]