DreEX6070444 @ danRer10
Exon Skipping
Gene
ENSDARG00000086484 | fbxw10
Description
F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
Coordinates
chr12:35854589-35855994:+
Coord C1 exon
chr12:35854589-35854710
Coord A exon
chr12:35855549-35855703
Coord C2 exon
chr12:35855852-35855994
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTATATTCATCACAGTGT
3' ss Score
6.44
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTGCTGGAACCTGAAAACAGGCATGTGTATGATGATTTTTCATGGACATTTTGGGACTATAAACTGCCTTGATTTGGTTGGAGATAGGCTGGTCTCTGGAGCCAAAGACTGTAGAGTTAAAG
Seq A exon
TGTGGAATCTACAGACTGGAAAGTGTGTTGAGAATCTGAAGTTTAAACACCCTAAACCAATCATGTGCGTGAAGATGAGTGAAACGCTGGTGATCAGCAGTTGTTCTGGAGGTCAGATCAGGATATGGAGCATCCAGACAGCATTGCTTATAAGG
Seq C2 exon
CAAATCAGTGGCCACCAGGGGGCAGTGTTGTGTTTGTGCTTCGATCAGTGGCATATCCTGTCTGGAGGTTCAGATGGTGTCGTCAAGGCCTGGAGCATTAATAGTAGCTTTAAGAAGTGCCTGCGGACCTTCCAGCATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086484-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
A:
PF0040027=WD40=PD(5.4=3.8),PF0040027=WD40=WD(100=73.1),PF0040027=WD40=PU(8.3=5.8)
C2:
PF0040027=WD40=PD(86.1=64.6),PF0040027=WD40=PU(27.8=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAACCTGAAAACAGGCA
R:
CCGCAGGCACTTCTTAAAGCT
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]