RnoEX6047689 @ rn6
Exon Skipping
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49276439-49282839:+
Coord C1 exon
chr10:49276439-49276560
Coord A exon
chr10:49281250-49281398
Coord C2 exon
chr10:49282697-49282839
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCTCTCCTTGTCAGAAT
3' ss Score
6.99
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATACTGGGATATAAAAACTGGGGCTTGCATACGAATCTTTTACGGCCACCAGGGGACAATCACTTGCCTGGATCTATATAAGAACAGACTTGTATCTGGAGCAAAAGATGGACAGGTGAAAG
Seq A exon
AATGGGACATAGAGACAGGGAAGTGCCTGAAGACCTTTAAACACAAAGATCCCATCTTGGCTGCCAGGATCAGTGAGACCTACATTGTGAGCAGCTGTGAGCGAGGCATAGTCAAGGTGTGGCATGTGGTCACAGCTCAGCTGCAAAAG
Seq C2 exon
ACTCTCACTGGGCACGAGGGAGCCGTGAAATGCCTGTTCTTTAACCAATGGCATCTCGTCTCTGGAGGTGCGGATGGGCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
A:
PF0040027=WD40=PD(5.4=4.0),PF0040027=WD40=PU(10.8=8.0)
C2:
PF0040027=WD40=PD(83.8=64.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGGCTTGCATACGAATC
R:
GGATGCTTGAAGGCCATCAGG
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]