MmuEX7006791 @ mm10
Exon Skipping
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62862630-62869154:+
Coord C1 exon
chr11:62862630-62862751
Coord A exon
chr11:62867521-62867669
Coord C2 exon
chr11:62869012-62869154
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCTCTCCTTGTCAGAAT
3' ss Score
6.99
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATACTGGGATGTGAAAACCGGGGCTTGTGTACGAATCTTTTATGGCCACCAGGGGACAATCACTTGCCTGGATGTCTATAAGAACAGGCTTGTATCTGGAGCAAAAGATGGACAGGTGAAAG
Seq A exon
AATGGGACATAGAGACAGGGAAGTGCCTGAAGACCTTTAAACACAAAGATCCCATCTTGGCTGCCAAGATCAGTGAGACCTACATTGTGAGCAGCTGTGAGCGAGGCATAGTCAAGGTGTGGCACGTTGTCACAGCTCAGCTGCAAAAG
Seq C2 exon
ACTCTCACTGGGCACGAGGGAGCTGTGAAGTGCCTGTTCTTTAACGAATGGCATCTCGTCTCTGGAGGTGCTGACGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-'15-19,'15-15,16-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
A:
PF0040027=WD40=PD(5.4=4.0),PF0040027=WD40=PU(10.8=8.0)
C2:
PF0040027=WD40=PD(83.8=64.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACCGGGGCTTGTGTAC
R:
GGATGCTTGAAGGCCATCAGG
Band lengths:
251-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types