GgaEX0001504 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NMG9]
Coordinates
chr18:2214593-2216069:+
Coord C1 exon
chr18:2214593-2214714
Coord A exon
chr18:2215166-2215314
Coord C2 exon
chr18:2215927-2216069
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTTAATCCTAACAGTGT
3' ss Score
7.46
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATGCTGGAATATATACAGTGGTGCTTGCATGAAAATCTTTACTGGTCACTGTGGGGCCATCACCTGCTTGGATTTACATGGCAAGAAGTTTGTGTCGGGAGGCACAGATGGGATGGTGAAAG
Seq A exon
TGTGGAACTTGGATAGCGGGGTATGTCTCTGGACTCTGAAACACAGCAATGTTGTTTATGCTGTTAAAATGAATGGAACCCATGCTGTCAGTGGGTGTGACAGAGGGCTGGTGAAAGTCTGGCATGCTGGCACAGGCACCCTGCTCAAA
Seq C2 exon
GTACTAGAAGGGCACCTAGGCCCAGTGAGGTGCTTGTCCTTTGATCAGTGGCACCTCGTCTCAGGAAGCAGTGATGGATATGCCTTTGGATGGAGCATGGTGGGAGACCTTAAGAGGTGCCTAACAGCTTTCCGTCACCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(91.9=81.0)
A:
PF0040027=WD40=PD(5.4=4.0),PF0040027=WD40=PU(10.8=8.0)
C2:
PF0040027=WD40=PD(83.8=64.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGGTGCTTGCATGAAAA
R:
GGGTGACGGAAAGCTGTTAGG
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]