BtaEX6087750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010576 | MAP2K3
Description
Bos taurus mitogen-activated protein kinase kinase 3 (MAP2K3), mRNA. [Source:RefSeq mRNA;Acc:NM_001083693]
Coordinates
chr19:35869687-35871942:+
Coord C1 exon
chr19:35869687-35869803
Coord A exon
chr19:35870682-35870733
Coord C2 exon
chr19:35871815-35871942
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTTCCTATCCCACACACCAGATC
3' ss Score
4.76
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGAGACGTGTGGATCTGCATGGAGCTCATGGACACGTCCCTGGACAAGTTCTATCGGAAGGTGCTAGACAAGGGCATGACGATCCCAGAAGACATTCTCGGGGAGATCGCTGTGTCT
Seq A exon
ATCGTGAGGGCCCTGGAACACCTGCACAGCAAGCTGTCCGTGATCCACAGAG
Seq C2 exon
ATGTGAAGCCGTCCAATGTCCTTATCAACAAGGAGGGCCACGTGAAGATGTGTGACTTTGGGATCAGTGGTTACTTGGTGGATTCCGTGGCCAAGACAATGGATGCTGGCTGCAAACCCTACATGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010576-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGTGGATCTGCATGGAG
R:
GGACATTGGACGGCTTCACAT
Band lengths:
135-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]