DreEX6070550 @ danRer10
Exon Skipping
Gene
ENSDARG00000099184 | map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
Coordinates
chr12:36451563-36452861:+
Coord C1 exon
chr12:36451563-36451679
Coord A exon
chr12:36452579-36452630
Coord C2 exon
chr12:36452734-36452861
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTATTCTTTTTGCAGATT
3' ss Score
11.22
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGCGACGTGTGGATATGCATGGAGTTGATGGACACTTCTCTGGATAAGTTTTATAAGCAGGTGCATGAGAAGGGAAAGACCATCCCGGAGGACATCCTGGGCAAGATCACAGTCTCT
Seq A exon
ATTGTGAAAGCATTAGAGCATCTCCACAGCAATCTGTCAGTCATACACAGAG
Seq C2 exon
ACGTCAAACCATCTAATGTCCTGATAAACATGCAGGGTCAGGTGAAAATGTGTGATTTTGGTATCAGTGGGTATCTTGTGGATTCAGTGGCAAAGACGATGGACGCCGGCTGCAAACCATACATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099184-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATCCTGGGCAAGATCA
R:
GTCCATCGTCTTTGCCACTGA
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]