GgaEX1034813 @ galGal4
Exon Skipping
Gene
ENSGALG00000004370 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr18:8285124-8287815:+
Coord C1 exon
chr18:8285124-8285179
Coord A exon
chr18:8285685-8285736
Coord C2 exon
chr18:8287688-8287815
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTCTAGATTTGTTCTTTCAGATT
3' ss Score
7.99
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGACGTGTGGATTTGCATGGAGCTGATGGATACCTCACTGGACAAATTCTACAA
Seq A exon
ATTGTAAAAGCACTAGAACATCTACACAGTAAGCTCTCCGTGATCCACAGAG
Seq C2 exon
ATGTAAAGCCCTCTAACGTGTTGATCAATACGCAGGGGCAGGTGAAAATGTGCGATTTTGGAATTAGCGGTTACCTCGTTGACTCGGTTGCTAAAACCATGGATGCTGGATGCAAACCCTACATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGATTTGCATGGAGCT
R:
GCAACCGAGTCAACGAGGTAA
Band lengths:
142-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]