RnoEX6050372 @ rn6
Exon Skipping
Gene
ENSRNOG00000004437 | Map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:RGD Symbol;Acc:620666]
Coordinates
chr10:98795731-98801711:+
Coord C1 exon
chr10:98795731-98795847
Coord A exon
chr10:98797024-98797075
Coord C2 exon
chr10:98801584-98801711
Length
52 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGTTTCTCTTGCAGATT
3' ss Score
13.38
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGCGATGTGTGGATCTGCATGGAGCTCATGGATACGTCACTAGATAAATTCTACAAACAAGTTATTGATAAAGGCCAAACAATTCCAGAAGATATCTTAGGGAAGATAGCAGTTTCT
Seq A exon
ATTGTAAAAGCATTAGAACATTTACACAGTAAGCTCTCTGTTATCCATCGAG
Seq C2 exon
ATGTCAAGCCTTCAAATGTGCTCATTAACACGCTGGGCCAAGTGAAGATGTGTGACTTTGGAATCAGCGGCTACCTGGTAGACTCTGTTGCGAAAACGATCGATGCCGGTTGCAAACCATACATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004437-'16-8,'16-7,17-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGATCTGCATGGAGCTC
R:
CCCAGCGTGTTAATGAGCACA
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]