MmuEX6090935 @ mm9
Exon Skipping
Gene
ENSMUSG00000020623 | Map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:MGI Symbol;Acc:MGI:1346870]
Coordinates
chr11:110354210-110357780:+
Coord C1 exon
chr11:110354210-110354326
Coord A exon
chr11:110355609-110355660
Coord C2 exon
chr11:110357653-110357780
Length
52 bp
Sequences
Splice sites
3' ss Seq
GGACTCTGTTTCTCTTGCAGATT
3' ss Score
11.6
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGCGACGTGTGGATCTGCATGGAGCTCATGGATACGTCACTAGATAAATTCTACAAACAAGTTATTGATAAAGGCCAAACAATTCCAGAGGATATCTTAGGAAAGATAGCAGTTTCT
Seq A exon
ATTGTAAAAGCGTTAGAACATTTACACAGTAAGCTGTCTGTTATCCATCGAG
Seq C2 exon
ACGTCAAGCCTTCTAATGTGCTCATTAACACACTGGGCCAGGTGAAGATGTGTGACTTTGGAATCAGTGGCTACCTGGTCGACTCTGTTGCTAAAACGATCGATGCCGGTTGCAAACCATACATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020623-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATCTGCATGGAGCTCAT
R:
GGCCCAGTGTGTTAATGAGCA
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: