BtaEX6091075 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001609 | MAP2K6
Description
Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034045]
Coordinates
chr19:61724682-61729069:-
Coord C1 exon
chr19:61728953-61729069
Coord A exon
chr19:61728228-61728279
Coord C2 exon
chr19:61724682-61724809
Length
52 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTGTTTCTCTTGCAGATT
3' ss Score
13.87
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGGATGTCTGGATCTGCATGGAGCTCATGGACACGTCCCTAGATAAATTCTACAAACAAGTGATCGATAAAGGCCAAACAATTCCAGAGGACATCTTAGGGAAAATAGCAGTTTCT
Seq A exon
ATTGTAAAAGCCTTAGAGCATTTGCACAGTAAGCTGTCTGTCATTCACCGAG
Seq C2 exon
ATGTCAAGCCCTCCAACGTGCTCATCAACGCTCTGGGCCAGGTGAAGATGTGCGACTTCGGAATCAGCGGCTACCTGGTTGACTCCGTGGCTAAAACCATCGATGCCGGATGCAAACCGTACATGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001609-'21-10,'21-8,22-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATCTGCATGGAGCTCA
R:
AGAGCGTTGATGAGCACGTTG
Band lengths:
144-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]