MmuEX0027676 @ mm9
Exon Skipping
Gene
ENSMUSG00000018932 | Map2k3
Description
mitogen-activated protein kinase kinase 3 [Source:MGI Symbol;Acc:MGI:1346868]
Coordinates
chr11:60758167-60760273:+
Coord C1 exon
chr11:60758167-60758283
Coord A exon
chr11:60759013-60759064
Coord C2 exon
chr11:60760146-60760273
Length
52 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCCTGCCCCATTCAGATC
3' ss Score
9.76
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGGGATGTATGGATCTGCATGGAGCTCATGGACACTTCCCTGGATAAGTTCTACCGGAAGGTGCTGGAGAAGAACATGAAAATTCCGGAAGACATCCTGGGGGAGATCGCTGTGTCT
Seq A exon
ATCGTGCGGGCCCTGGAGCACCTGCATAGCAAGCTGTCTGTGATCCACAGAG
Seq C2 exon
ATGTGAAGCCATCCAATGTCCTCATCAACAAGGAAGGGCATGTGAAGATGTGCGACTTTGGCATCAGTGGCTACCTGGTGGACTCTGTGGCAAAGACAATGGATGCTGGCTGCAAGCCTTACATGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018932_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.5=100)
A:
PF0006920=Pkinase=FE(6.5=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATCCTGGGGGAGATCG
R:
GCCAGCATCCATTGTCTTTGC
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types