GgaEX1034783 @ galGal4
Exon Skipping
Gene
ENSGALG00000004735 | MAP2K3
Description
dual specificity mitogen-activated protein kinase kinase 3 [Source:RefSeq peptide;Acc:NP_001012805]
Coordinates
chr14:4493519-4494694:-
Coord C1 exon
chr14:4494578-4494694
Coord A exon
chr14:4494390-4494441
Coord C2 exon
chr14:4493519-4493646
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGCTCTCTCTGCAGATT
3' ss Score
13.23
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCGATGTTTGGATCTGCATGGAGCTCATGGACACTTCCCTGGATAAGTTCTACAAGAAAGTACTGGAGAAGAAGAAAACCATCCCGGAGGACATCTTAGGGAAAATGGCTGTGTCT
Seq A exon
ATTGTACGAGCTCTGGAGCATCTGCACAGTAAACTGTCTGTAATCCACAGAG
Seq C2 exon
ATGTGAAGCCTTCCAACGTGCTCATCAACAAGGAGGGACATGTGAAAATGTGTGACTTTGGGATCAGTGGCTACTTGGTGGACTCGGTGGCGAAGACAATGGATGCTGGCTGCAAACCATACATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004735-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.1=100)
A:
PF0006920=Pkinase=FE(7.2=100)
C2:
PF0006920=Pkinase=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCATGGACACTTCCCT
R:
CCCTCCTTGTTGATGAGCACG
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]