BtaEX6087920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37100389-37101000:+
Coord C1 exon
chr19:37100389-37100550
Coord A exon
chr19:37100640-37100747
Coord C2 exon
chr19:37100893-37101000
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTGCCCCCACCACAGGGA
3' ss Score
8.16
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGAAATGCTGGACCCCCTGGCCCTCCTGGCCCTGCTGGCAAAGAAGGCAGCAAAGGCCCCCGCGGTGAGACTGGCCCCGCTGGGCGTCCCGGTGAAGTCGGTCCCCCTGGTCCCCCTGGCCCCGCTGGTGAGAAAGGAGCCCCTGGTGCTGACGGACCTGCT
Seq A exon
GGAGCTCCTGGCACTCCTGGACCTCAAGGTATTGCTGGACAGCGTGGTGTGGTCGGCCTGCCTGGTCAGAGAGGAGAAAGAGGCTTCCCTGGTCTTCCTGGCCCCTCT
Seq C2 exon
GGTGAACCCGGCAAACAAGGTCCTTCTGGAGCAAGTGGTGAACGTGGCCCCCCTGGTCCCATGGGCCCCCCTGGATTGGCTGGACCCCCTGGCGAGTCTGGACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103-'42-41,'42-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.6=14.8),PF0139113=Collagen=FE(69.7=100)
A:
PF0139113=Collagen=PD(19.7=41.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCTGGACCCCCTGG
R:
TCCAGCCAATCCAGGGGG
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]