RnoEX0022994 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82757463-82758290:+
Coord C1 exon
chr10:82757463-82757624
Coord A exon
chr10:82757724-82757831
Coord C2 exon
chr10:82758183-82758290
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTGCCTCCCTCAGGGC
3' ss Score
10.26
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGAAATGCTGGACCCCCTGGCCCTCCCGGTCCCGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTGAGACTGGTCCCGCTGGACGTCCTGGTGAAGTTGGTCCCCCAGGTCCCCCTGGCCCTGCTGGTGAGAAAGGATCTCCTGGTGCTGATGGACCTGCT
Seq A exon
GGCTCTCCTGGTACCCCTGGACCTCAGGGTATTGCTGGACAGCGTGGTGTGGTCGGTCTTCCCGGTCAGAGAGGAGAAAGAGGCTTCCCTGGTCTTCCTGGACCCTCT
Seq C2 exon
GGTGAACCCGGCAAACAAGGTCCTTCTGGAGCAAGTGGTGAACGTGGTCCCCCTGGCCCTATGGGCCCCCCTGGATTGGCTGGCCCCCCTGGTGAATCTGGTCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'79-49,'79-48,80-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.1=14.8)
A:
NO
C2:
PF0139113=Collagen=PU(28.9=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGTTGGCAAAGAAGGG
R:
CTCACGACCAGATTCACCAGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]