MmuEX6088969 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94808932-94809753:+
Coord C1 exon
chr11:94808932-94809093
Coord A exon
chr11:94809197-94809304
Coord C2 exon
chr11:94809646-94809753
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTCTGCCTCCCACAGGGC
3' ss Score
11.65
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGAAATGCTGGACCCCCTGGCCCTCCCGGTCCCGTTGGCAAAGAAGGGGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCAGGTCCCCCCGGTCCTGCTGGTGAGAAAGGATCTCCTGGTGCTGATGGACCTGCT
Seq A exon
GGCTCTCCTGGTACCCCTGGACCTCAGGGTATTGCTGGACAACGTGGTGTGGTCGGTCTTCCCGGTCAGAGAGGAGAAAGAGGCTTCCCTGGTCTTCCTGGCCCCTCT
Seq C2 exon
GGTGAACCTGGCAAACAAGGTCCTTCTGGATCAAGTGGTGAACGCGGTCCCCCTGGCCCCATGGGGCCCCCTGGATTGGCTGGTCCCCCTGGTGAATCTGGACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'43-41,'43-40,44-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.3=14.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGTTGGCAAAGAAGGG
R:
CTCACGTCCAGATTCACCAGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: