BtaEX6087929 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37092956-37093527:+
Coord C1 exon
chr19:37092956-37093009
Coord A exon
chr19:37093342-37093395
Coord C2 exon
chr19:37093483-37093527
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTCCTCCTATCTTAGGGT
3' ss Score
9.57
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGCTCGGGGATTGCCTGGAACAGCTGGCCTCCCTGGAATGAAGGGACACAGA
Seq A exon
GGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGCTGGTCCTGCTGGCCCCAAG
Seq C2 exon
GGCGAGCCTGGTAGCCCCGGTGAAAATGGAGCTCCTGGTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=53.3),PF0139113=Collagen=PU(8.3=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGGATTGCCTGGAACA
R:
CATCTGACCAGGAGCTCCATT
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]