RnoEX0022964 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82750580-82751142:+
Coord C1 exon
chr10:82750580-82750633
Coord A exon
chr10:82750961-82751014
Coord C2 exon
chr10:82751098-82751142
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCGTCTTCTTCCTTGTGAAGGGT
3' ss Score
7.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGCTCGTGGATTGCCTGGAACAGCTGGCCTCCCCGGAATGAAGGGACACAGA
Seq A exon
GGTTTCAGTGGTTTGGATGGTGCCAAAGGAGATACTGGTCCTGCTGGTCCTAAG
Seq C2 exon
GGAGAGCCTGGCAGTCCTGGTGAAAATGGAGCTCCCGGCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(13.3=53.3),PF0139113=Collagen=PU(8.3=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCGTGGATTGCCTG
R:
CCGGGAGCTCCATTTTCACC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]