GgaEX1016486 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23711794-23714211:+
Coord C1 exon
chr2:23711794-23711847
Coord A exon
chr2:23712064-23712117
Coord C2 exon
chr2:23714167-23714211
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTACTCCATATAGGGA
3' ss Score
6.37
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTGCTCGTGGTTTCCCTGGAACTCCTGGTCTGCCTGGCTTTAAGGGAATTAGG
Seq A exon
GGACACAATGGTCTGGATGGTCAGAAGGGACAACCTGGTACTCCTGGCACCAAG
Seq C2 exon
GGTGCTCGTGGGAGTGATGGCAGCGCTGGCCCCACTGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-3/39=2-6
Average complexity
C2
Mappability confidence:
94%=100=93%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(10.3=44.4)
C2:
PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=PU(2.4=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGTTTCCCTGGAACTC
R:
CAGCGCTGCCATCACTCC
Band lengths:
78-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]