HsaEX6009041 @ hg19
Exon Skipping
Gene
ENSG00000164692 | COL1A2
Description
collagen, type I, alpha 2 [Source:HGNC Symbol;Acc:2198]
Coordinates
chr7:94034985-94037203:+
Coord C1 exon
chr7:94034985-94035038
Coord A exon
chr7:94035562-94035615
Coord C2 exon
chr7:94037159-94037203
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAATAAGGCTTTCCTTTCAGGGA
3' ss Score
7.17
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGCTCGTGGTTTCCCTGGAACTCCTGGACTTCCTGGCTTCAAAGGCATTAGG
Seq A exon
GGACACAATGGTCTGGATGGATTGAAGGGACAGCCCGGTGCTCCTGGTGTGAAG
Seq C2 exon
GGTGAACCTGGTGCCCCTGGTGAAAATGGAACTCCAGGTCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164692-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.8=100)
A:
PF0139113=Collagen=FE(21.8=100),PF0139113=Collagen=PU(16.9=77.8)
C2:
PF0139113=Collagen=PD(10.3=53.3),PF0139113=Collagen=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGTGGTTTCCCTGGAAC
R:
TGACCTGGAGTTCCATTTTCACC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)