BtaEX6026257 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11635258-11637465:+
Coord C1 exon
chr4:11635258-11635311
Coord A exon
chr4:11635845-11635898
Coord C2 exon
chr4:11637421-11637465
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATGAGGATTTGCCTTTCAGGGT
3' ss Score
5.83
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGCTCGTGGCTTTCCTGGAACTCCTGGACTCCCTGGCTTCAAGGGCATTAGG
Seq A exon
GGTCACAATGGTCTGGATGGATTGAAGGGACAGCCTGGTGCTCCAGGTGTGAAG
Seq C2 exon
GGTGAACCTGGTGCCCCTGGTGAAAATGGAACTCCAGGTCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.5=100)
A:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(21.8=94.4)
C2:
PF0139113=Collagen=PD(11.4=60.0),PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=PU(7.0=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGCTTTCCTGGAACTC
R:
CGTTTGACCTGGAGTTCCATT
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]