GgaEX1016486 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23540716-23542690:+
Coord C1 exon
chr2:23540716-23540769
Coord A exon
chr2:23540986-23541039
Coord C2 exon
chr2:23542646-23542690
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTACTCCATATAGGGA
3' ss Score
6.37
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTGCTCGTGGTTTCCCTGGAACTCCTGGTCTGCCTGGCTTTAAGGGAATTAGG
Seq A exon
GGACACAATGGTCTGGATGGTCAGAAGGGACAACCTGGTACTCCTGGCACCAAG
Seq C2 exon
GGAGAACCTGGTGCCCCTGGTGAAAATGGTACCCCAGGACAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(10.3=44.4)
C2:
PF0139113=Collagen=PD(14.8=60.0),PF0139113=Collagen=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGTTTCCCTGGAACTC
R:
AGGTTGTCCTGGGGTACCA
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]