MmuEX6002804 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4466392-4468518:+
Coord C1 exon
chr6:4466392-4466445
Coord A exon
chr6:4466900-4466953
Coord C2 exon
chr6:4468474-4468518
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAGTGTTCATTGCCTTTCAGGGA
3' ss Score
7.36
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGCTCGTGGTTTCCCCGGGACTCCTGGACTTCCTGGCTTCAAAGGCGTGAAA
Seq A exon
GGACACAGTGGTATGGATGGATTAAAGGGACAGCCTGGTGCACAGGGTGTGAAG
Seq C2 exon
GGTGAACCCGGTGCCCCTGGAGAGAATGGAACTCCAGGTCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.0=80.0)
A:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(13.6=61.1)
C2:
PF0139113=Collagen=PD(16.4=80.0),PF0139113=Collagen=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCGTGGTTTCCCCG
R:
TGCTTGACCTGGAGTTCCATT
Band lengths:
98-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: