BtaEX6087952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040521 | SAMD14
Description
Bos taurus sterile alpha motif domain containing 14 (SAMD14), mRNA. [Source:RefSeq mRNA;Acc:NM_001105018]
Coordinates
chr19:37163539-37171877:+
Coord C1 exon
chr19:37163539-37163593
Coord A exon
chr19:37171018-37171184
Coord C2 exon
chr19:37171589-37171877
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCCCTGGTTTGCAGACC
3' ss Score
10.53
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTCTCTCGAGTCATGGCTTCTTCAAAGCTCCGAGAACCTGTGGATGAGGTTTTTG
Seq A exon
ACCTGGACTTGGCAGTGCCAGAAACCGTCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTACTGGCCAAGGGCCGGAGACACCGGCCCTCTCGCTCCAGGCTTCGGGACAGTGCCAGCTCTGCAGAGGATGGTGAAGGCTCCGATGGGCCTGGAGGCAAG
Seq C2 exon
GGAACCGACGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTCTGCACTCGGGCCCCGGGTCCCCAGCTGGGGGCTCCTTCTGCCTGGAGCCCCCGGGATTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCACCGCTCGCACGCTACCGGCCCCTGCACAACACCGCCTCGCACGAGGGTCTGGCCGCCGCCTCCGGCTCGCCGCCCCGCTCCGCTGCTTCGTCCGACAGCTCGCCCAGCTTCGTGCGCCGCCACCCTCGCGCCGAGCTGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040521-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.946 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCGAGTCATGGCTTCT
R:
GCCAGACCCTCGTGCGAG
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]