MmuEX0040944 @ mm10
Exon Skipping
Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:95014352-95020218:+
Coord C1 exon
chr11:95014352-95014406
Coord A exon
chr11:95019361-95019527
Coord C2 exon
chr11:95019930-95020218
Length
167 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTCTCCGTTTGCAGACC
3' ss Score
10.05
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTCTCTTGAGTCATGGCTTCCTCAAAGCTCCGAGAACCTGTGGATGAAGTTTTTG
Seq A exon
ACCTGGACTTGGCTGTACCAGAGACCACCAGACTGGACAGCAGCTTACACAAAGCCAGGGCTCAACTGCTGGCCAAGGGCCGGAGACACCGGCCTTCCCGTTCCAGGCTACGAGACAGTGCCAGCTCTGCCGAGGACGGTGAAGGCTCTGATGGGCCCGGAGGCAAG
Seq C2 exon
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTCTACATTCGGGTCCAGGCTCCCCAGCCAGTGGATCTTTCTGCCTGGAGCCCCCGGGCTTGAGGCGCAGTCTGGATGAGGACGAACCGCCGCCCTCGCCACTCGCTCGGTACCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCCGCCACCTCCGGCTCGCCACCACGCTCTGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGTTACCCTCGAGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF153271=Tankyrase_bdg_C=PU(1.6=6.7)
A:
PF153271=Tankyrase_bdg_C=FE(88.7=100)
C2:
PF153271=Tankyrase_bdg_C=PD(6.5=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAACCTGTGGATGAAGT
R:
AGGAGGGTGCAGAGCGTG
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types