Special

MmuEX0040944 @ mm9

Exon Skipping

Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:94875666-94881532:+
Coord C1 exon
chr11:94875666-94875720
Coord A exon
chr11:94880675-94880841
Coord C2 exon
chr11:94881244-94881532
Length
167 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTCTCCGTTTGCAGACC
3' ss Score
10.05
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTCTCTTGAGTCATGGCTTCCTCAAAGCTCCGAGAACCTGTGGATGAAGTTTTTG
Seq A exon
ACCTGGACTTGGCTGTACCAGAGACCACCAGACTGGACAGCAGCTTACACAAAGCCAGGGCTCAACTGCTGGCCAAGGGCCGGAGACACCGGCCTTCCCGTTCCAGGCTACGAGACAGTGCCAGCTCTGCCGAGGACGGTGAAGGCTCTGATGGGCCCGGAGGCAAG
Seq C2 exon
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTCTACATTCGGGTCCAGGCTCCCCAGCCAGTGGATCTTTCTGCCTGGAGCCCCCGGGCTTGAGGCGCAGTCTGGATGAGGACGAACCGCCGCCCTCGCCACTCGCTCGGTACCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCCGCCACCTCCGGCTCGCCACCACGCTCTGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGTTACCCTCGAGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.933 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF153271=Tankyrase_bdg_C=PU(1.6=6.7)

							
A:
PF153271=Tankyrase_bdg_C=FE(88.7=100)

							
C2:
PF153271=Tankyrase_bdg_C=PD(6.5=6.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000062231





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000123361
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:50118161-50118327 
HIGH PSI
HsaEX6023473
(SAMD14)
Human
(hg19)
chr17:48195525-48195691 
HIGH PSI
HsaEX6023473
(SAMD14)
Rat
(rn6)
chr10:82829042-82829166 
Cow
(bosTau6)
chr19:37171018-37171184 
HIGH PSI
BtaEX6087952
(SAMD14)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr12:10654544-10654701 
HIGH PSI
DreEX0007680
(SAMD14)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCGAGAACCTGTGGATGAAGT

				
R: 
AGGAGGGTGCAGAGCGTG

				
Band lengths: 
258-425

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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