HsaEX6023473 @ hg19
Exon Skipping
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:27312]
Coordinates
chr17:48194771-48202335:-
Coord C1 exon
chr17:48202281-48202335
Coord A exon
chr17:48195525-48195691
Coord C2 exon
chr17:48194771-48195059
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCCCGGTTCGCAGACC
3' ss Score
10.94
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTCTCTTGAGTCATGGCTTCTTCAAAGCTCCGAGAACCCGTGGATGAAGTTTTTG
Seq A exon
ACCTGGACTTGGCTGTGCCAGAGACGGCCAGACTGGACAGCAGTTTACACAAGGCCCGGGCCCAACTGTTGGCCAAGGGCCGGAGACACCGGCCATCCCGCTCCAGGCTTCGGGACAGTGCCAGCTCCGCGGAGGATGGTGAAGGCTCGGATGGGCCCGGAGGCAAG
Seq C2 exon
GTGACCGATGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTTTGCACTCAGGCCCGGGGTCCCCGGCCGGGGGCTCTTTCTGCCTGGATCCTCCGGGGTTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCGCCGCTCACACGCTACCGGCCCCTGCACAACGCTGCGTCGCACGAGGGCCTGGCCGCCGCCTCCTGCTCTCCGCCGCGCTCCGCGCCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGCCGCCACCCGCGCGCAGAGCCGCACAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100-'4-7,'4-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCGTGGATGAAGTTTT
R:
GGAGCTGTCGGAGGAGGG
Band lengths:
266-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)