DreEX0007680 @ danRer10
Exon Skipping
Gene
ENSDARG00000101171 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr12:10650253-10665106:-
Coord C1 exon
chr12:10665057-10665106
Coord A exon
chr12:10654544-10654701
Coord C2 exon
chr12:10650253-10650589
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCATACCTCATTAGATC
3' ss Score
6.64
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
ATTGAATATGTCCTCCACTCCGCTGGCCGAGGCAGAAGAGGATGTGTTTG
Seq A exon
ATCTGACGGAGGCGGTTCCTGAGACCGAACGGCTTGACAGCAGCCTACAGAAAGCCAAAGCACAACTGTCAATCAAAACCAGGAGACATCGACCTTCCCGAACCCGCCTTAGGGACAGTGTGAGCTCCATAGATGGAGATGACGGCATTGACAGAATG
Seq C2 exon
AGCTATGGCTCTTCCCCGGTCCACCCATCTTTCCACTGTTCCTCCCCCTCCTCCGACCTGCTCCTGTCCTCCCCTTCCTCACGAAGAGACCGAGCTTTCACCTTTGACCCCTGCACTGTGGTTGGAGAACGGGAGGTGCAAGATGAAAAAAGGAGCTACAGACACCTCCTGAATACTTCCCAGGAGACCCTGCCTCTCAGCCCATTAAAATCCCCCTCCAGAGCCTGCGTCCATTCAGAGACATCATCCCCAGCTCATCTTTGCCAGACGGACCGCCTCAAGTCTCGTGAGGGAAGCCAACCTCTACTACACTATGGAGAATACTCACAGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101171-'2-8,'2-6,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.964 C2=0.885
Domain overlap (PFAM):
C1:
PF153271=Tankyrase_bdg_C=PU(5.3=20.0)
A:
PF153271=Tankyrase_bdg_C=FE(91.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGTCCTCCACTCCGCTGG
R:
TTAATGGGCTGAGAGGCAGGG
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]