BtaEX6088141 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006586 | KPNB1
Description
karyopherin (importin) beta 1 [Source:HGNC Symbol;Acc:HGNC:6400]
Coordinates
chr19:39417832-39420037:-
Coord C1 exon
chr19:39419813-39420037
Coord A exon
chr19:39418733-39418924
Coord C2 exon
chr19:39417832-39417962
Length
192 bp
Sequences
Splice sites
3' ss Seq
AATAACTGTTATGTTTACAGGCT
3' ss Score
7.47
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATGAAAATGACGACGATGACGACTGGAACCCCTGCAAAGCCGCAGGGGTGTGCCTCATGCTTCTGGCCACCTGCTGTGAAGATGACATTGTCCCACATGTCCTTCCCTTCATCAAAGAACACATCAAGAACCCTGACTGGCGGTACCGGGATGCAGCAGTGATGGCTTTTGGCTGCATCTTGGAAGGACCAGAGCCCAATCAACTCAAACCACTAGTTATACAG
Seq A exon
GCTATGCCCACCTTAATAGAATTAATGAAAGACCCCAGTGTGGTTGTTCGAGATACAACCGCATGGACAGTGGGCAGAATCTGTGAACTGCTCCCTGAAGCCGCCATCAATGATGTCTACTTGACTCCCCTGCTGCAGTGTCTGATTGAGGGCCTCAGTGCTGAACCCAGAGTGGCTTCAAATGTGTGCTGG
Seq C2 exon
GCTTTCTCCAGTCTGGCTGAAGCTGCTTATGAAGCTGCAGATGTAGCTGATGATCAGGAAGAACCAGCTACCTATTGCTTATCTTCTTCTTTTGAACTCATAGTTCAGAAGCTCTTAGAGACCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006586-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135131=HEAT_EZ=PU(50.0=37.3)
A:
PF135131=HEAT_EZ=PD(46.4=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACGATGACGACTGGAAC
R:
CATAAGCAGCTTCAGCCAGACT
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]