DreEX0042148 @ danRer10
Exon Skipping
Gene
ENSDARG00000104889 | kpnb1
Description
karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
Coordinates
chr19:48370290-48371128:+
Coord C1 exon
chr19:48370290-48370514
Coord A exon
chr19:48370698-48370889
Coord C2 exon
chr19:48370998-48371128
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGGCG
3' ss Score
8.49
5' ss Seq
TGGGTAATA
5' ss Score
4.95
Exon sequences
Seq C1 exon
GATGAAAACGATGACGATGACGACTGGAACCCGTGTAAGGCCGCAGGAGTGTGTCTGATGCTGCTGGCCACCTGCTGTGAGGATGATGTGGTGCCGCACGTGCTGCCCTTCATCAAGGAGCACATCAAACACCCCGACTGGCGCTACCGCGACGCCTCCGTCATGGCCTTCGGCTCTATCCTGGAGGGTCCTGAACTCAACCAGCTCAAACCACTCGTCATCCAG
Seq A exon
GCGATGCCCACGCTGATCGAGCTGATGAAAGACCCCAGTGTGGTGGTGCGGGACACGACGGCCTGGACTCTGGGCCGCATCTGTGATCTGCTGCCTGAAGCCGCCATCAATGAGGTGTATCTGAGCCCGCTGCTGCAGTGCCTGATCGAGGGGCTGGGGGCCGAACCACGCGTCGCCTCCAACGTCTGCTGG
Seq C2 exon
GCTTTCTCCAGTCTGGCTGAGGCGGCGTATGAGGCCACAGATGTGGCGGATGATCAGGAGGAGCCGAGCACTTACTGCTTGTCCTCCTCCTTCGAGCTGATCGTGCAGAAGCTGCTGGAGACCACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104889-'12-18,'12-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF135131=HEAT_EZ=PU(50.0=37.3)
A:
PF135131=HEAT_EZ=PD(46.4=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGGATGATGTGGTGCC
R:
ATCAGCTCGAAGGAGGAGGAC
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]