RnoEX6049388 @ rn6
Exon Skipping
Gene
ENSRNOG00000009275 | Kpnb1
Description
karyopherin subunit beta 1 [Source:RGD Symbol;Acc:2909]
Coordinates
chr10:85105764-85109770:-
Coord C1 exon
chr10:85109546-85109770
Coord A exon
chr10:85107481-85107672
Coord C2 exon
chr10:85105764-85105894
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCATTGTGCTTACAGGCT
3' ss Score
7.96
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGAAAACGATGACGACGATGACTGGAACCCTTGCAAAGCAGCTGGGGTGTGCCTCATGCTCCTGTCTACCTGCTGTGAAGATGACATTGTGCCACATGTCCTTCCCTTTATTAAAGAGCACATCAAGAACCCTGACTGGCGGTACCGGGATGCAGCAGTGATGGCTTTTGGCAGCATCTTGGAAGGACCAGAGCCTAACCAGCTTAAACCATTAGTCATACAG
Seq A exon
GCTATGCCCACCCTGATAGAATTAATGAAAGACCCCAGTGTAGTTGTTCGAGATACAACAGCATGGACTGTGGGCAGGATCTGTGAGCTGCTGCCTGAAGCTGCCATCAATGATGTCTACTTGGCACCCCTTTTACAGTGTCTGATTGAGGGTCTCAGTGCTGAACCCAGAGTGGCTTCAAATGTGTGCTGG
Seq C2 exon
GCTTTTTCCAGTCTGGCTGAAGCTGCTTACGAAGCTGCAGATGTAGCTGATGATCAGGAAGAACCAGCCACCTATTGCTTGTCTTCTTCCTTTGAACTTATAGTTCAGAAGCTGCTGGAGACCACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009275-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135131=HEAT_EZ=PU(50.0=37.3)
A:
PF135131=HEAT_EZ=PD(46.4=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGATGACTGGAACCCTTG
R:
TTCGTAAGCAGCTTCAGCCAG
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]