MmuEX6089199 @ mm10
Exon Skipping
Gene
ENSMUSG00000001440 | Kpnb1
Description
karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
Coordinates
chr11:97169902-97173277:-
Coord C1 exon
chr11:97173053-97173277
Coord A exon
chr11:97171522-97171713
Coord C2 exon
chr11:97169902-97170032
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTATTGTATTTACAGGCT
3' ss Score
7.46
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGAAAACGATGACGACGATGACTGGAACCCTTGCAAAGCAGCTGGGGTGTGCCTCATGCTCCTGTCCACCTGCTGTGAAGATGACATTGTGCCGCATGTCCTTCCCTTTATTAAAGAGCACATCAAGAACCCTGACTGGCGATACCGGGATGCAGCAGTGATGGCTTTTGGCAGTATCTTGGAAGGACCAGAGCCTAATCAACTGAAACCATTAGTCATACAG
Seq A exon
GCTATGCCCACCCTAATAGAACTAATGAAAGACCCCAGTGTAGTTGTTCGAGACACAACAGCGTGGACTGTGGGCAGGATCTGTGAGCTGCTGCCTGAAGCCGCCATCAACGATGTCTACCTGGCACCCCTTTTACAGTGTCTGATTGAGGGCCTCAGTGCTGAGCCCAGGGTGGCTTCAAATGTGTGCTGG
Seq C2 exon
GCTTTTTCCAGTCTGGCTGAAGCTGCGTATGAAGCTGCAGATGTAGCTGATGATCAAGAAGAACCAGCCACCTATTGTCTGTCTTCTTCCTTTGAACTTATAGTTCAGAAGCTATTGGAGACCACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001440-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135131=HEAT_EZ=PU(50.0=37.3)
A:
PF135131=HEAT_EZ=PD(46.4=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGATGACTGGAACCCTTG
R:
TTCATACGCAGCTTCAGCCAG
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types