GgaEX6027387 @ galGal3
Exon Skipping
Gene
ENSGALG00000000454 | KPNB1
Description
NA
Coordinates
chr27:3810826-3813086:-
Coord C1 exon
chr27:3812862-3813086
Coord A exon
chr27:3812145-3812336
Coord C2 exon
chr27:3810826-3810956
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGACCACGATTATCTCTCAGGCA
3' ss Score
6.31
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGAAAATGATGATGATGATGACTGGAACCCCTGTAAAGCAGCAGGAGTCTGCCTCATGCTCCTGGCGACCTGCTGTGAAGATGACATTGTTCCTCACGTGCTGCCCTTTATTAAAGAACACATCAAAAACCCAGACTGGCGATACAGAGATGCAGCTGTGATGGCTTTTGGGTGCATTTTGGAAGGACCAGAGCCTAACCAGCTCAAACCACTAGTTATACAG
Seq A exon
GCAATGCCGACTTTAATAGAGCTGATGAAGGACCCCAGCGTCGTGGTTCGAGACACAGCAGCCTGGACCGTGGGCAGGATCTGTGAGATGCTCCCTGAGGCAGCCATCAATGACATTTACCTCGCCCCACTGCTGCAGTGTCTGATCGAGGGCCTGAGCGCCGAGCCCCGGGTGGCCTCCAACGTGTGCTGG
Seq C2 exon
GCCTTCACTAGTCTTGCTGAAGCTGCCTATGAAGCTGCAGATGTAGCTGATGATCAGGAAGAACCAGCAACCTACTGCTTATCCTCTTCATTTGAGCTAATAGTTCAGAAACTTCTGGAGACCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000454-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135131=HEAT_EZ=PU(50.0=37.3)
A:
PF135131=HEAT_EZ=PD(46.4=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACCCCTGTAAAGCAGC
R:
CTGCAGCTTCATAGGCAGCTT
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]