BtaEX6088806 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43227649-43229787:+
Coord C1 exon
chr19:43227649-43227799
Coord A exon
chr19:43228674-43228813
Coord C2 exon
chr19:43229630-43229787
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGGTCTCTTTATAGCTC
3' ss Score
9.76
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GAGCACAGTGGTTCCACCGTGCCCTCCATTCTGAACAGGATGCAGACAAACCAGACTCCCCCCACCTATAACAAGACCAACAAGTTCACGTATGGCTTTCAGAACATAGTGGATGCTTATGGAATTGGAACTTACCGAGAGATAAATCCAG
Seq A exon
CTCCATACACCATCATCACTTTCCCTTTCCTGTTTGCTGTGATGTTTGGTGACCTTGGCCATGGCATTTTGATGACTCTTTTTGCTGTATGGATGGTGTTAAGAGAGAGCCGGATCCTCTCCCAGAAGAATGAGAATGAG
Seq C2 exon
ATGTTCAGCACTATATTCAGCGGCAGGTACATCATTCTGTTGATGGGCGTGTTCTCCATCTACACTGGCCTCATCTATAACGACTGCTTTTCCAAGTCTCTTAATATCTTTGGGTCATCCTGGAGCGTACGGCCGATGTTCGATATATACAACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.2=100)
A:
PF0149614=V_ATPase_I=FE(5.7=100)
C2:
PF0149614=V_ATPase_I=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGACAAACCAGACTCCC
R:
ATATCGAACATCGGCCGTACG
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]