DreEX0015942 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7590778-7593061:-
Coord C1 exon
chr24:7592961-7593061
Coord A exon
chr24:7591372-7591511
Coord C2 exon
chr24:7590778-7590938
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTGTTTCTTGCAGCCC
3' ss Score
11.26
5' ss Seq
GAGGTCTTC
5' ss Score
-1.07
Exon sequences
Seq C1 exon
TCCTTCTGCATAGTCCCTTATTTATCAGAGATCACCACAGTGGAATGAATCGGCATATGTTTATTGGCAACGGATGCCCTTCCAGTCGTTACTCAGTTCTG
Seq A exon
CCCCGTACACAATCATCACGTTCCCGTTCCTGTTTGCTGTCATGTTTGGGGACATGGGGCATGGCGTGCTGATGACCTCTGCTGCGCTTTACCTTGTCCTTAGAGAGACCCGTCTGCTTGCTCAGAAGAGTGACAATGAG
Seq C2 exon
ATGTTTAACATGATTTTTGCTGGACGTTACATCATTCTACTGATGGGGATGTTCTCAGTCTACACCGGGCTCATCTATAATGACTGCTTCTCAAAGTCCCTCAACATGTTCAGCTCTGGCTGGAGTGTTCGACCCATGTTTGCACCTAATGGAAACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-'12-14,'12-13,13-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(1.3=41.7)
A:
PF0149614=V_ATPase_I=FE(5.7=100)
C2:
PF0149614=V_ATPase_I=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGCATAGTCCCTTATTT
R:
TGCAAACATGGGTCGAACACT
Band lengths:
245-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]