GgaEX1010028 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4941497-4942905:+
Coord C1 exon
chr27:4941497-4941647
Coord A exon
chr27:4941840-4941979
Coord C2 exon
chr27:4942748-4942905
Length
140 bp
Sequences
Splice sites
3' ss Seq
GGAGTGTCTTTCTCTTACAGCCC
3' ss Score
9.39
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGCACAGTGGTTCCACTGTCCCATCTATTTTAAATCGGATGCAAACCAATCAGACCCCACCAACATACAACAAAACTAACAAGTTCACTTGTGGCTTTCAGAACATTGTTGATGCTTACGGCATTGGAACTTATCGGGAAATAAATCCAG
Seq A exon
CCCCATATACGATCATTACCTTCCCGTTTCTGTTTGCTGTGATGTTTGGAGATTTTGGACATGGAATCCTGATGACTCTGATTGCTATTTGGATGGTGCTTAGGGAGAGTCGGATTCTGTCGCAGAAAAGTGACAATGAG
Seq C2 exon
ATGTTCAACACTGTTTTTAGTGGTCGATACATCATCCTGCTGATGGGACTGTTCTCCACTTACACAGGCCTTATCTATAACGACTGCTTCTCCAAGTCTCTTAATATGTTTGGTTCATCATGGAGCGTCCGGCCGATGTTCTCAAAAGCCAATTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'20-24,'20-22,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.3=100)
A:
PF0149614=V_ATPase_I=FE(5.8=100)
C2:
PF0149614=V_ATPase_I=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCAATCAGACCCCAC
R:
TTTTGAGAACATCGGCCGGAC
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]