GgaEX1010028 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4597161-4598569:+
Coord C1 exon
chr27:4597161-4597311
Coord A exon
chr27:4597504-4597643
Coord C2 exon
chr27:4598412-4598569
Length
140 bp
Sequences
Splice sites
3' ss Seq
GGAGTGTCTTTCTCTTACAGCCC
3' ss Score
9.39
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGCACAGTGGTTCCACTGTCCCATCTATTTTAAATCGGATGCAAACCAATCAGACCCCACCAACATACAACAAAACTAACAAGTTCACTTGTGGCTTTCAGAACATTGTTGATGCTTACGGCATTGGAACTTATCGGGAAATAAATCCAG
Seq A exon
CCCCATATACGATCATTACCTTCCCGTTTCTGTTTGCTGTGATGTTTGGAGATTTTGGACATGGAATCCTGATGACTCTGATTGCTATTTGGATGGTGCTTAGGGAGAGTCGGATTCTGTCGCAGAAAAGTGACAATGAG
Seq C2 exon
ATGTTCAACACTGTTTTTAGTGGTCGATACATCATCCTGCTGATGGGACTGTTCTCCACTTACACAGGCCTTATCTATAACGACTGCTTCTCCAAGTCTCTTAATATGTTTGGTTCATCATGGAGCGTCCGGCCGATGTTCTCAAAAGCCAATTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.4=100)
A:
PF0149614=V_ATPase_I=FE(5.9=100)
C2:
PF0149614=V_ATPase_I=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACCAATCAGACCCCAC
R:
TTTTGAGAACATCGGCCGGAC
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]