RnoEX0013248 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88941164-88943558:+
Coord C1 exon
chr10:88941164-88941314
Coord A exon
chr10:88942897-88943036
Coord C2 exon
chr10:88943401-88943558
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGGCTCCTTTGTAGCTC
3' ss Score
7.88
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
GAGCACAGCGGTTCCACTGTCCCCTCCATTCTGAACAGGATGCAGACAAACCAGACACCCCCGACGTATAACAAAACCAACAAGTTCACGCACGGCTTCCAGAACATAGTGGATGCTTATGGGATCGGCACTTACCGAGAAATTAACCCAG
Seq A exon
CTCCGTACACCGTCATCACCTTCCCCTTTCTGTTTGCTGTGATGTTCGGAGATTTTGGGCACGGCATTTTGATGACTCTGTTTGCTGTGTGGATGGTGTTGAGGGAGAGCCGGATCCTCTCCCAGAAGAACGAGAATGAG
Seq C2 exon
ATGTTTAGCATGGTGTTCAGCGGCCGATACATTATCCTTCTGATGGGACTGTTCTCCATCTACACTGGACTCATCTACAATGACTGCTTTTCCAAGTCTCTGAATATCTTTGGGTCATCATGGAGCGTACGGCCAATGTTCACCATAGGGAACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'28-29,'28-28,29-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.3=100)
A:
PF0149614=V_ATPase_I=FE(5.8=100)
C2:
PF0149614=V_ATPase_I=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGACAAACCAGACACCC
R:
ATGGTGAACATTGGCCGTACG
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]