BtaEX6089048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016253 | G6PC3
Description
Bos taurus glucose 6 phosphatase, catalytic, 3 (G6PC3), mRNA. [Source:RefSeq mRNA;Acc:NM_183364]
Coordinates
chr19:44531725-44534937:+
Coord C1 exon
chr19:44531725-44531983
Coord A exon
chr19:44534337-44534443
Coord C2 exon
chr19:44534847-44534937
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTGCTCTTTTCTAGGTT
3' ss Score
10.62
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCTTGCATCAAACCCTGGCCGGACCAGCCCGGGAGTCGCCATGGAGTCCACGCTGGGCGCGGGCATCGCGATGGCCGAGGCGCTGCAGAACCAGCTGCCCTGGTTGGAGAACGTGTGGCTCTGGGTCACCTTTCTGGGGGACCCCAAGAGCCTCTTTCTGTTCTACTTCCCCGCGGCCTACTATGCGTCTCGCCGGGTGGGCATTGCGGTGCTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCGTCTTCAAGTG
Seq A exon
GTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTCCATGAGTCTGGGTACTACAGCCAAGCTCCAGCCCAGGTTCACCAATTCCCCTCTTCTTGTGAAACTGGCCCAG
Seq C2 exon
GCAGCCCTTCTGGACACTGTATGATCACAGGAGCAGCCCTCTGGCCCATAATGACAGCCGTCTCTTCCCAGATGGCCACTCGGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016253-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(22.2=47.9)
A:
PF0156916=PAP2=FE(22.8=100)
C2:
PF0156916=PAP2=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTTGGAGAACGTGTG
R:
GAGTGGCCATCTGGGAAGAGA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]