HsaEX0026720 @ hg19
Exon Skipping
Gene
ENSG00000141349 | G6PC3
Description
glucose 6 phosphatase, catalytic, 3 [Source:HGNC Symbol;Acc:24861]
Coordinates
chr17:42148118-42152138:+
Coord C1 exon
chr17:42148118-42148551
Coord A exon
chr17:42151528-42151634
Coord C2 exon
chr17:42152048-42152138
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGCATCTGTTCTCTTCCAGGTT
3' ss Score
12.03
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CGGAGGAGAGCGCAGGAGGAAACAGTACCGGCTGGAGGCCGGTCTTGCAGGAGCGGGGGACTGCTGGGGGCGGGGCTTGGTGGTGACCGCTGGCGGGGCGGGGCCTGGGGCTCAGAGGGGTGGGCTTTGGAGATCAGAGGGTCGACGCTGCTTCGTTGCCTGGACTCTGGTTTCCGCCCTGGAGCAAGCCGGGGCCTGGTCGGCAGCTGGGCCGCCATGGAGTCCACGCTGGGCGCGGGCATCGTGATAGCCGAGGCGCTACAGAACCAGCTAGCCTGGCTGGAGAACGTGTGGCTCTGGATCACCTTTCTGGGCGATCCCAAGATCCTCTTTCTGTTCTACTTCCCCGCGGCCTACTACGCCTCCCGCCGTGTGGGCATCGCGGTGCTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCATCTTCAAGTG
Seq A exon
GTTTCTTTTTGGAGACAGGCCCTTTTGGTGGGTCCATGAGTCTGGTTACTACAGCCAGGCTCCAGCCCAGGTTCACCAGTTCCCCTCTTCTTGTGAGACTGGTCCAG
Seq C2 exon
GCAGCCCTTCTGGACACTGCATGATCACAGGAGCAGCCCTCTGGCCCATAATGACGGCCCTGTCTTCGCAGGTGGCCACTCGGGCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141349_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=FE(22.6=100)
C2:
PF0156916=PAP2=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGAACCAGCTAGCCTG
R:
CGAAGACAGGGCCGTCATTAT
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)