RnoEX6049838 @ rn6
Exon Skipping
Gene
ENSRNOG00000020902 | G6pc3
Description
glucose 6 phosphatase catalytic subunit 3 [Source:RGD Symbol;Acc:727875]
Coordinates
chr10:90134193-90136946:+
Coord C1 exon
chr10:90134193-90134582
Coord A exon
chr10:90136364-90136470
Coord C2 exon
chr10:90136856-90136946
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTATCTTGTCTCTTCCAGGTT
3' ss Score
12.36
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GGGCGGGGCAGGGCGGGGGTGGGACTTGGCTTAGACCCTTGGCGGGGAGGGCAGGGCTGGGGATTAGAAAGGGTGGGCTTTAGAAGACTAGCAGGTAGCCGCTTCATTTCTCCTAAGGTTCCTCGACTTGCTCCCTATAACCAGCTCCAGCCTGGAGGATTCCTGACTCGCCATGGAGTCCACTCTGAGCGCCGGCATCATGATGGCTGAAGCACTACAAAACCAGCTTCCCGGGCTAGAGAATATGTGGCTCTGGGTCACCTTTCTGGCCGATCCCAAGAACCTCTTTCAGTTCTACTTCCCCGCGGTCTACTACGCCTCCCGCCGCCTGGGCATCTCCCTGTTCTGGATCGCCTTCATTACTGAGTGGCTCAACCTCGTCTTCAAGTG
Seq A exon
GTTTCTGTTTGGAGACAGGCCCTTCTGGTGGGTGCATGAATCCGGGTACTCCGCCCAGACTCCAGTCCAGATTCACCAGTTCCCTTCTTCTTGTGAGACTGGTCCAG
Seq C2 exon
GCAGCCCCTCTGGTCACTGCATGATCACAGGCGCAGCTTTGTGGCCCGTAATGATAGCCATTTCATCTCAGGTGGCCTCTCAGACCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020902-'1-4,'1-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(16.3=32.9)
A:
PF0156916=PAP2=FE(24.5=100)
C2:
PF0156916=PAP2=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAAACCAGCTTCCCGGG
R:
GCCACCTGAGATGAAATGGCT
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]