DreEX0033923 @ danRer10
Exon Skipping
Gene
ENSDARG00000020371 | g6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:ZFIN;Acc:ZDB-GENE-061215-19]
Coordinates
chr12:3189509-3192575:+
Coord C1 exon
chr12:3189509-3189829
Coord A exon
chr12:3192297-3192403
Coord C2 exon
chr12:3192485-3192575
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCATGTAATGTGGCATTTAGGAT
3' ss Score
5.33
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAAAACATGACACATCTGTCCATCTGACAGTTGATTCTCAGAGTCTGGAAGATGAAAAGTGGAAATTAATTTTATTCCTGGACGTTTATTGAACATCTTATAATGGAGAGCGTCTACCGGCAGGGCGTGTGGATGGCGGAAGCCCTTCAGCAGAAAAGCAGAAGTTTGGAGGATATGTGGCTCGTCGCTTCTCATATGGGAGACCCGAAAGCCGCGGTTCTGCTGGTTTTCCCCGTCGTGTTTTACATACATCGCCGGACAGGCATCGCTGTGCTCTGGGTAGCAGCTCTTTCAGAGTGGCTTAATCTGGTTCTTAAATG
Seq A exon
GATCCTCTTTGGCGAGAGGCCTTACTGGTGGATTGGACAATCTGGCTTGTTTTCTGAAAAGCCTCCAGAAGTGCAGCAGTTTCAGTCCACCTGTGAGAGCGGTCCAG
Seq C2 exon
GCAGTCCGTCGGGTCACGCTATGGTCACCAGTGCAGTATGGTGGGTGATCGTCTCTTCTCTGGCCTCCTTCAGTCAAGCTTACACAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020371_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(22.2=47.9)
A:
PF0156916=PAP2=FE(22.8=100)
C2:
PF0156916=PAP2=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCCCTTCAGCAGAAAA
R:
GGAGGCCAGAGAAGAGACGAT
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]