BtaEX6089118 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001610 | BEB3
Description
Bos taurus solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) (SLC4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_181036]
Coordinates
chr19:44692189-44693915:-
Coord C1 exon
chr19:44693746-44693915
Coord A exon
chr19:44693472-44693648
Coord C2 exon
chr19:44692189-44692788
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACCCCAGCCTCTGCCCACAGGTG
3' ss Score
9.82
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GCGTTTCCATCCTCATGGGACCCGTCCTCCGCCACATCCCCCTGGCGGTGCTCTTCGGCATCTTCCTCTACATGGGGGTCACATCCCTCAGTGGCATCCAGTTGTTTGACCGCGTCTTGCTTTTGTTGAAGCCGCGCAAGTACTATCCAGAAGTGCCCTACGCCAGGAGG
Seq A exon
GTGAAAACCTGGCGCATGCACTTGTTCACGATCACCCAGATTGTCTGCCTGGTGGTGCTGTGGGTAGTGAGGAGCATCAAACAAATCTCACTGGCCCTCCCCTTCATCCTCATCCTCACGGTGCCCCTACGCCGCTTCCTGCTACCATTCATTTTCCGGGACATGGAGCTCAAGCTT
Seq C2 exon
CTGGATGCTGATGATGTCAAACTGAACTTGGATGAGCAGAATGGTCAGGATGAATACGATGAGGTGGCCATGCCTGTGTGAGGGGAGAGCCTGGGCCCCAGAGCCCCCTCCACCATTGCACTTCCCCGTTCTCCCAAGAAAAGCAGAAGTTCCTGGGCACCTCATGGACTCCCAGGTGCCCGGTGGGCAGCAGTTGAAGTCCCGGGGACATGGGTCGGGGAAGGAAGGGGTGTCTAGGAAGCTTTGCATGAAGGGTAGACTGGCTTTTCTGGATGGAAATGACCAGTGGGGCCCAAAGTAGAGGATTCGCTGTGCAGCCCCTCCTGGGCCACACTGCTACCTGAGGGTCCTGGCCTGGAAGACTGAAATCTAAGTCCTACCTCCTCAAGGCACAGACAGCGGCAGTAACAAGGTGGGAGTTGGTGGGGGGTGGGGGGGGATTCAAAATCCTGCTTGCTATATAACCCTGGGGAAGTCCCTGGATCTCTCCAGCCTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001610-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.6=100)
A:
PF0095516=HCO3_cotransp=PD(3.9=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATGGGGGTCACATCCCT
R:
TTCTTGGGAGAACGGGGAAGT
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]